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Bio-IT World October 2006 Kevin Davies	Search and Deploy The Biogen Idec library has been transformed into a den of literature informatics and text mining, with librarians there not content just to handle complicated queries, but anxious to seek out and tackle problems researchers didn't know could be asked.
Bio-IT World March 10, 2003 Salvatore Salamone	Common Knowledge Two heads (or more) are better than one, except when they don't share information. That's where knowledge management comes in.
ONLINE May/Jun 2007 Lavengood & Kiser	Information Professionals in the Text Mine With the information explosion, text mining tools are becoming more important. Here is an overview.
Bio-IT World July 11, 2002 Malorye Branca	Deep Sequence Diving Like sailors of old, genomic data miners dream of discovering riches and fame. Given the recent improvements in analytics -- and a little more time -- they just might succeed.
Bio-IT World November 2006 John Russell	Pathway Pioneers Innovative uses for pathway tools and exciting results from early users are sprouting like mushrooms after a spring rain -- albeit following a few harsh winters. And the usually risk-averse pharmaceutical industry has led in adopting pathway tools.
Industrial Physicist Jennifer Ouellette	Bioinformatics moves into the mainstream An explosion of data is being tamed with new systems
ONLINE Sep/Oct 2010 BeDell & Trudell	Does Taxonomy Matter in a New World of Search and Discovery In a Google world, even information professionals wonder if the traditional library information sources' reliance on controlled vocabularies remains a viable, worthwhile, and cost-effective strategy.
Bio-IT World July 14, 2004 Malorye A. Branca	The Pathways Promise By using the right tools, even a modest genomic data set can generate a good view into a particular biological pathway. Now, a range of new technologies is arising from academia as well as the commercial sector to meet this need.
Chemistry World August 13, 2015	Exploiting the data mine Chemists must embrace open data to allow us to collectively get the best out of the masses of new knowledge we unearth, reports Clare Sansom
Bio-IT World Dec 2006/Jan 2007 John Russell	Novartis' Answer to Harry Potter Imagine a magic wand able to instantly materialize novel, safe, and effective drugs. No such device exists, of course, but Novartis has a distant cousin of sorts: the UltraLink is an immensely powerful text-mining tool and knowledge management platform.
Bio-IT World January 21, 2005	Defining 'Integrative Genomics' Five experts from academia and industry discuss the burgeoning field of integrative genomics.
D-Lib Jul/Aug 2012 Bertin & Atanassova	Semantic Enrichment of Scientific Publications and Metadata Our aim is to bring new value to scientific publications by automatic extraction and semantic analysis.
Bio-IT World April 15, 2003 Malorye Branca	Beyond the Blueprint How will the wealth of data emanating from the human genome and allied technologies impact research on health and disease?
BusinessWeek June 13, 2005 John Carey	The NIH's Roadmap for Research Charting the human genome was just the beginning. Now the focus is creating pathways that will lead to practical applications.
Bio-IT World July 15, 2003	Millennium's PARIS Illuminates Pathways To address high-throughput-data challenges, Millennium Pharmaceuticals built the PAthway Resource and Information System, or PARIS -- a unique platform for combining knowledge from heterogeneous data sources in the construction of a pathway knowledgebase.
Bio-IT World April 15, 2003 Mark D. Uehling	Target Elimination Industry and FDA scientists turn to databases, applications software, and laboratory chips to move the safest, most effective molecules into clinical trials.
Bio-IT World November 12, 2002 Michael Goldman	A Virtual Pharmacopeia Computational modeling of disease pathways, organs --- even patients --- could transform drug discovery. Does salvation exist in silico?
Bio-IT World September 2006 John A. Wass	Integrating Knowledge The results of new mathematical routines have the potential to save pharmaceuticals millions of dollars in drug development. And yet the flow of successful drugs is dwindling. The problem goes beyond bureaucracy and lies in the complexity of the problem.
Fast Company November 2009 David H. Freedman	The Gene Bubble: Why We Still Aren't Disease-Free When the human genome was first sequenced nearly a decade ago, the world lit up with talk about how new gene-specific drugs would help us cheat death. Well, the verdict is in: Keep eating those greens.
Bio-IT World October 9, 2002 Malorye Branca	The Path to Personalized Medicine The tactics have changed, sometimes dramatically, but hints of the promise of pharmacogenomics are finally starting to trickle in from studies of asthma, cancer, and drug response.
Bio-IT World February 18, 2004	The Quest for Complex Genes Genetic sleuths are homing in on genes for complex diseases with the help of new, and some not so new, tools and strategies.
Bio-IT World July 2005 Kevin Davies	Medicine Gets Personal Touch More genomics-based drugs are moving into development with others, such as new cancer drugs showcasing on the clinical pharmacogenics scene as outlined in the Advances in Genomic Medicine program of a recent world conference.
Bio-IT World June 15, 2003 Elizabeth Gardner	Mouse Hunt The deluge of data and accompanying proliferation of databases is spiraling out of control. New federations and solutions may offer partial relief.
Information Today March 4, 2014 Nancy K. Herther	Text Mining: Elsevier Releases New Terms for Academe Elsevier says their new policy enshrines text- and data-mining rights in their standard ScienceDirect subscription agreement for academic customers.
Bio-IT World February 11, 2005 Kevin Davies	The Galileo Code In searching 400 years of French-Canadian history for genetic clues to diseases among Quebec's founding population, Genizon BioSciences -- formerly Galileo Genomics -- is rapidly becoming the bio-IT company du jour.
Information Today February 13, 2012	Elsevier Launches TargetInsights for Early Drug Discovery This online decision support tool enables scientists to search, monitor, and stay up-to-date with the latest biological insights reported in the scientific literature.
Bio-IT World October 14, 2004 Zachary Zimmerman	Follow the Pathway to Increased ROI Although this software has been commercially available for only a year, Ingenuity claims nine of the top 10 pharmaceutical companies as customers, including Pfizer, Wyeth, GlaxoSmithKline, and Aventis.
D-Lib Jul/Aug 2012 Knoth et al.	Special Issue on Mining Scientific Publications Digital libraries that store scientific publications are becoming increasingly important in research. They are used not only for traditional tasks such as finding and storing research outputs, but also as sources for discovering new research trends.
Bio-IT World Jul/Aug 2006 Deb Janssen	Managing the Microarray Data Mountain Genomic studies often involve thousands of samples and require hundreds of thousands of assays per sample. Microarray manufacturers are scurrying to satisfy researcher demands for increased array density, sample number, and content flexibility.
Bio-IT World December 15, 2003 Zachary Zimmerman	Learning the Language of Systems Biology Geneticist par excellence David Botstein talks about his philosophy, science, his mission for integrative science, and what he deems a success for systems biology.
CFO January 1, 2006 Yasmin Ghahremani	The Joy of Text Valuable information lurks in ''unstructured'' data, and new tools such as text mining can help companies extract it.
Bio-IT World May 19, 2004 John Russell	Seeing the Forest and the Trees A tiny clearing in the fog of systems biology.
ONLINE Jul/Aug 2012 Sarah L. Elichko	Triage, Treat, Release: Finding Medical Information Using MedlinePlus and PubMed Emergency rooms have instituted a protocol called Triage, Treat, Release to care for patients presenting with minor injuries. It's also an apt metaphor for librarians helping patrons to find information, whether the reference desk is physical or virtual.
Information Today February 19, 2007 Tara Breton	Elsevier Introduces Emscopes Database for Drug Information Emscopes is a more powerful product literature database (PLD) that is a directed at the specific needs of subscribing clients in pharmaceutical and biotech companies.
Bio-IT World November 12, 2002 James Golden	The Business of Bioinformatics The industry has reached an interesting crossroads. As an academic branch of learning, bioinformatics remains mostly what it always was, a cross-disciplinary endeavor between computer science and molecular biology. But bioinformatics as a money-making proposition has different criteria for success.
Bio-IT World August 15, 2005 Robert M. Frederickson	What's 'Post' About Postgenomic? Bioinformatics tools can help organize and study genomic sequences that were discovered in the '90s. The tools help with tasks like analyzing gene expression, predicting protein structure and function, and establishing networks of interacting protein in cells.
Bio-IT World October 10, 2003 Donna Mendrick	Microarrays That Make Drugs Safe Using DNA chips to discover potential toxicity in new drug compounds -- a key application of toxicogenomics -- can predict adverse effects before they occur, enabling safer clinical trials.
Wired August 2003 Jennifer Kahn	The End of Cancer (As we Know it) Diagnosis. Chemotherapy. Radiation. Slow painful death. No more. A new era of cancer treatment is dawning. Meet three scientists who are using the revelations of the Human Genome Project to reshape medicine.
Bio-IT World September 2006 Nat Goodman	Getting a Handle on Systems Biology Systems biology is squarely an experimental field that eats, drinks, and breathes data. To do systems biology, you need an experimental system that is amenable to large-scale experimentation.
Bio-IT World January 13, 2003 John Dodge	Talent Fuels Drug Pipeline in Swiss Time The functional genomics group has emerged as a critical link in the drug discovery chain at Novartis Pharmaceuticals Corp. While it employs a multidisciplinary approach to drug discovery, the four-year-old group's goals could not be simpler: Find novel drug targets.
Bio-IT World February 2006 John Russell	Marvelous Models of Biological Systems Here are highlights from a roundtable discussion with researchers representing academia and pharmaceuticals, as well as executives from modeling technology providers on whether or not Pharma is ready to bet on computational modeling of biological systems.
Information Today April 5, 2004 Paula J. Hane	New ClusterMed Organizes PubMed Results Vivisimo, Inc. a provider of clustering and meta-search software for organizing search results, has announced the release of ClusterMed, a new research tool that allows biomedical and life sciences researchers to search the MEDLINE database far more productively and efficiently.
Bio-IT World Dec 2006/Jan 2007 Kevin Davies	The NextBio Thing in Bioinformatics NextBio, which this fall officially introduced its platform after a year of beta testing by a handful of select organizations, aims to provide high-throughput information to researchers without them having to learn anything.
Information Today May 22, 2006 Paula J. Hane	Recommind Enhances Its MindServer Platform The new release of MindServer 4.2 introduces what the company calls its Search-Based Application Integration framework, which offers capabilities for integrating content from multiple applications.
Pharmaceutical Executive October 1, 2008	The other half of an HIV mystery is solved When HIV infects a human immune cell, which of the cell's own genes play a role?
Salon.com May 1, 2000 Arthur Allen	Listening to DNA The genome project is getting the buzz. But the real breakthroughs may come from labs out of the limelight, like Gene Logic.
Information Today September 15, 2003	NewsBreaks PubMed to Gain OLDMEDLINE Citations... Communication Abstracts Now Available from CSA... SPARC Partners with New Labor Studies Journal...
Bio-IT World September 2006 Robert M. Frederickson	Assays and Knowledgebases for Genomic Analysis An important aspect of any genomic analysis -- whether expression profiling or analysis of DNA-binding elements as above -- is the integration of the data with existing knowledge.
Bio-IT World June 2006 Kevin Davies	The Data Deluge: Deal or No Deal? Far from decrying the data glut, researchers should embrace the complexity of genomic and other sources of data, particularly for its predictive properties in the field of personalized medicine.
Technology Research News January 28, 2004 Kimberly Patch	Robot automates science Scientists would seem to hold one of the last occupations threatened by automation, given the brainpower and education involved. But equipping a laboratory robot with artificial intelligence software makes for a fair approximation of a scientist. Faster gene and drug discovery could result.